BtaALTA0007217-3/3 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000012274 | CIZ1
Description
CDKN1A interacting zinc finger protein 1 [Source:HGNC Symbol;Acc:HGNC:16744]
Coordinates
chr11:98816097-98816506:-
Coord C1 exon
chr11:98816413-98816506
Coord A exon
chr11:98816201-98816229
Coord C2 exon
chr11:98816097-98816200
Length
29 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
3' ss Seq
TGCTCCACCTGGCATGGCAGTCT
3' ss Score
2.91
Exon sequences
Seq C1 exon
GATTCTTCTTCTCAGACGACGCCTGTGGAGGACAAATCGGACCCCCCAGAGGGGTCTGAAGAAGCCGCAGAGCCCCGAACAGAAACACCCGAAG
Seq A exon
TCTCTCACCTGCCCTCCATCCCAGACCAG
Seq C2 exon
GAACCTCCCCAGTGCCCAGATGACATCGCTAAGGAGAAATGCACTCCAGCACTTGAGCCTGAGTCTTGTGAAGCCTCTGAGCCGCCAGCTAAAAAGTCAAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012274-8-14,8-13,8-12-3/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTTCTTCTCAGACGACGCCT
R:
CCTTAGCGATGTCATCTGGGC
Band lengths:
125-154
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development