BtaINT0038727 @ bosTau6
Intron Retention
Gene
ENSBTAG00000012274 | CIZ1
Description
CDKN1A interacting zinc finger protein 1 [Source:HGNC Symbol;Acc:HGNC:16744]
Coordinates
chr11:98816097-98816506:-
Coord C1 exon
chr11:98816413-98816506
Coord A exon
chr11:98816206-98816412
Coord C2 exon
chr11:98816097-98816205
Length
207 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
3' ss Seq
TCACCTGCCCTCCATCCCAGACC
3' ss Score
9.13
Exon sequences
Seq C1 exon
GATTCTTCTTCTCAGACGACGCCTGTGGAGGACAAATCGGACCCCCCAGAGGGGTCTGAAGAAGCCGCAGAGCCCCGAACAGAAACACCCGAAG
Seq A exon
GTGAGGGAGAGAGGGAAGCTGCTGGTCCTTTGGAGGGATGTGGGTTGGGGGGAGGTGGGTGCGGGGAGCAGCCATGGAGGCAGATCTGGGAGGCAGGGCTCTTATAGGGGGCGGGGGGAATTGTGAGCCCAGGCCCCACCTCCTGGAACTGGGAACTCATACGTGCTCCACCTGGCATGGCAGTCTCTCACCTGCCCTCCATCCCAG
Seq C2 exon
ACCAGGAACCTCCCCAGTGCCCAGATGACATCGCTAAGGAGAAATGCACTCCAGCACTTGAGCCTGAGTCTTGTGAAGCCTCTGAGCCGCCAGCTAAAAAGTCAAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012274:ENSBTAT00000016302:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTTCTTCTCAGACGACGCCT
R:
TTTGACTTTTTAGCTGGCGGC
Band lengths:
197-404
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development