MmuINT0036599 @ mm9
Intron Retention
Gene
ENSMUSG00000039205 | Ciz1
Description
CDKN1A interacting zinc finger protein 1 [Source:MGI Symbol;Acc:MGI:1920234]
Coordinates
chr2:32225552-32225864:+
Coord C1 exon
chr2:32225552-32225645
Coord A exon
chr2:32225646-32225761
Coord C2 exon
chr2:32225762-32225864
Length
116 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
3' ss Seq
CTCACCTGCCACCATTGCAGACC
3' ss Score
8.74
Exon sequences
Seq C1 exon
GATTCTTCTTCTCAGACGGTGCCTCTGGAAGACAGGGAAGACCCCACAGAGGGGTCTGAGGAAGCCACGGAGCTCCAGATGGACACATGTGAAG
Seq A exon
GTGAGAAACAAGGGCGGCTGCCCTTCACAAGGGACATCGGGGCAGGGAAGATCTTGGTGGCAAGTAAGCCAGGGCCATCTCCTGGAGCTATGTTTCCTCACCTGCCACCATTGCAG
Seq C2 exon
ACCAAGATTCACTAGTCGGTCCAGATAGCATGCTGAGTGAGCCCCAAGTGCCTGAGCCTGAGCCCTTTGAGACATTGGAACCACCAGCCAAGAGGTGCAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039205-Ciz1:NM_028412:6
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTTCTTCTCAGACGGTGCCT
R:
CTCCTGCACCTCTTGGCTG
Band lengths:
194-310
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: