HsaINT1007744 @ hg38
Intron Retention
Gene
ENSG00000148337 | CIZ1
Description
CDKN1A interacting zinc finger protein 1 [Source:HGNC Symbol;Acc:HGNC:16744]
Coordinates
chr9:128180415-128180814:-
Coord C1 exon
chr9:128180721-128180814
Coord A exon
chr9:128180524-128180720
Coord C2 exon
chr9:128180415-128180523
Length
197 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
3' ss Seq
CGCTCATGCCTCCATTCCAGACC
3' ss Score
8.26
Exon sequences
Seq C1 exon
GATTCTTCTTCTCAGACAATGCCTGTGGAAGACAAGTCAGACCCCCCAGAGGGGTCTGAGGAAGCCGCAGAGCCCCGGATGGACACACCAGAAG
Seq A exon
GTGAGGGAGGGAGGCTGCTGGCCCTTCAGAGGGACATGAATGGGGTGGGGCCAGTGGGCGGGTCAGCAGGTGATAGAGGCAGGTGTGGGAGGCAGGGGTTCTTGGTGGGAAGGCGGGGAGCCCAGGCCCCATCTCTTGGAGGTCAGAGATGCTTGCTCTTCCCAACATGAGTTCCCTCGCTCATGCCTCCATTCCAG
Seq C2 exon
ACCAAGATTTACCGCCCTGCCCAGAGGACATCGCCAAGGAAAAACGCACTCCAGCACCTGAGCCTGAGCCTTGTGAGGCGTCCGAGCTGCCAGCAAAGAGATTGAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000148337:ENST00000357558:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTCTTCTTCTCAGACAATGCCTGT
R:
CTCCTCAATCTCTTTGCTGGCA
Band lengths:
202-399
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains