BtaALTA0008108-1/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000026403 | CREBBP
Description
Bos taurus CREB binding protein (CREBBP), mRNA. [Source:RefSeq mRNA;Acc:NM_001164022]
Coordinates
chr25:3067299-3072845:-
Coord C1 exon
chr25:3072757-3072845
Coord A exon
NA
Coord C2 exon
chr25:3067299-3067379
Length
0 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAGC
5' ss Score
8.89
3' ss Seq
TATGGCCTTCTTGCTGACAGGTA
3' ss Score
9.35
Exon sequences
Seq C1 exon
TATGAGTTTTCCCCACAGACTCTGTGCTGCTATGGGAAGCAGCTGTGTACAATTCCTCGAGATGCTGCCTACTACAGCTATCAGAATAG
Seq A exon
NA
Seq C2 exon
GTATCACTTCTGTGAGAAGTGTTTCACAGAGATCCAGGGGGAGAATGTTACCCTGGGTGACGACCCTTCACAACCCCAGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000026403-19-21,19-20-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.321
Domain overlap (PFAM):
C1:
PF060018=DUF902=PD(66.7=93.3)
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTGTGCTGCTATGGGAAGC
R:
AGGGTAACATTCTCCCCCTGG
Band lengths:
124-154
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development