RnoALTA0010329-1/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000005330 | Crebbp
Description
CREB binding protein [Source:RGD Symbol;Acc:2401]
Coordinates
chr10:11697154-11702985:+
Coord C1 exon
chr10:11697154-11697242
Coord A exon
NA
Coord C2 exon
chr10:11702905-11702985
Length
0 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAGC
5' ss Score
8.89
3' ss Seq
TATGGCCTTCTTGCTGACAGGTA
3' ss Score
9.35
Exon sequences
Seq C1 exon
TATGAGTTCTCCCCACAGACTTTGTGCTGCTATGGAAAGCAGCTGTGTACAATTCCTCGTGATGCAGCCTACTACAGCTATCAGAATAG
Seq A exon
NA
Seq C2 exon
GTATCATTTCTGTGAGAAGTGTTTCACAGAGATCCAGGGCGAGAATGTGACCCTGGGTGACGACCCTTCCCAACCTCAGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005330-25-25,25-24-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.357
Domain overlap (PFAM):
C1:
PF060018=DUF902=PD(66.7=93.3)
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAATTCCTCGTGATGCAGCCT
R:
TCTGAGGTTGGGAAGGGTCG
Band lengths:
120-150
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]