BtaALTA0008656-2/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000008232 | DAB2IP
Description
Bos taurus DAB2 interacting protein (DAB2IP), mRNA. [Source:RefSeq mRNA;Acc:NM_001144082]
Coordinates
chr11:92652048-92655167:+
Coord C1 exon
chr11:92652048-92652226
Coord A exon
chr11:92654264-92654329
Coord C2 exon
chr11:92654330-92655167
Length
66 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGA
5' ss Score
8.91
3' ss Seq
GTGTGCTTGTCTCCCTGCAGTCT
3' ss Score
10.72
Exon sequences
Seq C1 exon
AGCATCGTATCCAAGCTGGGGCCTCTGCCTCGAATCCTGAGGGACGTCCACACGGCTCTGAGCACCCCGGGCAGTGGGCAGCTCGCAGGCACCAACGACTTGGCCTCTACACCTGGCTCTGGCAGCAGCAGCGTCTCGGCTGGGCTGCAGAAGATGGTAATCGAGAACGACCTGTCTGG
Seq A exon
TCTGATAGATTTCACCCGGTTACCGTCTCCAACCCCCGAAAACAAGGACTTGTTTTTTGTCACAAG
Seq C2 exon
GTCCTCCGGGGTCCAGCCCTCACCTGCCCGCAGCTCGAGTTACTCGGAAGCCAACGAGCCCGACCTTCAGATGGCCAACGGCGGCAAGAGTCTGTCCATGGTGGACCTCCAAGACGCCCGCGTGCTGGATGGGGAGGCGGGCTCCCCAGCAGGCCCCGACGCCCTCACCGCCGATGGCCAAGCGCCTGCCACTCAGCTGGTGGCCGGGTGGCCGGCCCGGGCGGCCCCCGTGAGCCTGGCGGGGCTGGCCACAGTGCGGCGGGCAGGCCAGACGCCCACCACGCCGGGCACGTCGGAGGGCGCGCCAGGCCGGCCCCAGCTCCTGGCACCGCTGTCCTTCCAGAATCCCGTGTACCAGATGGCGGCTGGCCTGCCGCTGTCTCCCCGCGGCCTCGGCGACTCGGGCTCTGAGGGCCACAGCTCCCTGAGCTCCCACAGCAACAGTGAAGAGCTGGCAGCTGCCACCAAGCTGGGCAGCTTCAGCAGCAGCACTGCCGCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008232-30-19,30-18-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.417 A=NA C2=0.914
Domain overlap (PFAM):
C1:
PF120043=DUF3498=PU(9.1=78.3)
A:
NA
C2:
PF120043=DUF3498=FE(58.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAACGACTTGGCCTCTACACC
R:
CCGTTGGCCATCTGAAGGTC
Band lengths:
168-234
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development