DreALTA0009270-2/2 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000075110 | dab2ipb
Description
DAB2 interacting protein b [Source:ZFIN;Acc:ZDB-GENE-030131-2449]
Coordinates
chr5:33091651-33094099:-
Coord C1 exon
chr5:33093921-33094099
Coord A exon
chr5:33092532-33092536
Coord C2 exon
chr5:33091651-33092531
Length
5 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAAG
5' ss Score
5.2
3' ss Seq
CCATCTTTTCACTTTACTAGCCC
3' ss Score
6.73
Exon sequences
Seq C1 exon
AGTGCTGCCTCCAAGCTTGGCCCATTACCGAGAATATTGAGGGACGTCCATGGAGCGTTAACAAACCCGACGAATGTACAGATGAGCGTTCCTTCTGACCGAGTGCCCTCGCCACCAGTCCCTGGATGCAGCATCTCCACTGGAATACAAAAGATGGCCATTGACAGCGACCTGCCAGG
Seq A exon
CCCAG
Seq C2 exon
TGGACTTTACTCGCCTTCCTTCCCCCACCCCTGAAAACAAAGACCTCTTCTTCGTTACACGCTCTTCTGGCCTCCAGGGCTCCCCTACCCGCAGCTCCAGCTACTCTGAGGCCAATGAACCCGAGCTGGGTCTGGCCAACGGTGGCAAGAGTCTGTCCATGGTAGACCTCCAGGAAGCAGCCAGAGCGTTAGAACCCATTTCCATTCCGGCAGGGATAACTTCAGAAGGTATGGGTGAGGGTGCCATGGTCCCCTGGAATGCACGGACTCCTCAAGGCAACATTGCTGGAGGCCCGACTCTTCACAGGCCAGTACAGAGTCCCACTACCCCAGGAGCAGAAGGGGCCCCAGGCAGGCCCACGCAGCTCTTGGCCCCACTATCTTTCCAGAATCCAGTGTACCAGATGGCAGCAGGGTTGCCAGTCTCCGCTAGGGGTAATGCGAGTGGGGATTCTGGGTCGGAGTGTCACAGTTCCGTCAGTTCCCATAGCAACAATGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000075110-15-17,15-16-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.483 A=NA C2=0.963
Domain overlap (PFAM):
C1:
PF120043=DUF3498=PU(9.3=78.3)
A:
NA
C2:
PF120043=DUF3498=FE(58.3=100),PF055578=MAD=PU(5.6=3.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGATGGCCATTGACAGCGAC
R:
GAGGCCAGAAGAGCGTGTAAC
Band lengths:
103-108
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]