BtaALTA0009008-2/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000031809 | DENND1C
Description
DENN/MADD domain containing 1C [Source:HGNC Symbol;Acc:HGNC:26225]
Coordinates
chr7:19228798-19229232:+
Coord C1 exon
chr7:19228798-19228877
Coord A exon
chr7:19229025-19229044
Coord C2 exon
chr7:19229045-19229232
Length
20 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
3' ss Seq
GGCTGTCCATCCTCACCCAGGAC
3' ss Score
7.42
Exon sequences
Seq C1 exon
AATCGGCCCCTTCGCCCTAGGAGTCGCCCCAGCAGGAGACTTAGGCTGGAAGAGAAACCTTCTGAGTCCCTGGAAGAGAG
Seq A exon
GACACCCTCCCTGAGCCCAG
Seq C2 exon
AGGATGCTCAGGACCCGTGGGCAGAGGAAGCGCTGGATGGCAGCTTCCTGGGGTCTGGAGAAGAACTGGATTTGCTAAGTGAGATATTGGATAGCCTGAGCACGAGAGCCACGCGGACTGGTAGCCTGCGGCCCAGCCAGAGTTTAGACTGCTGCCACAGAGAGGACTTGGACAGCTGCCTCAGCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000031809-23-24,23-23-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.786
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCAGGAGACTTAGGCTGGA
R:
AGTTCTTCTCCAGACCCCAGG
Band lengths:
118-138
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development