MmuALTA0005318-1/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000002668 | Dennd1c
Description
DENN/MADD domain containing 1C [Source:MGI Symbol;Acc:MGI:1918035]
Coordinates
chr17:57066732-57067116:-
Coord C1 exon
chr17:57067049-57067116
Coord A exon
NA
Coord C2 exon
chr17:57066732-57066942
Length
0 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
3' ss Seq
GATGTCAATCCTCAATCCAGGAG
3' ss Score
5.32
Exon sequences
Seq C1 exon
AACAGGCCCCTCCGCCCCAGCAGGAGACTCAAGACTGAAGAGGGACCTTCCGAACCCCTGCGGGAGAG
Seq A exon
NA
Seq C2 exon
GAGCCCCACCTTGAGCCCTGGGGACACTCAGAACCCCTGGGCAGAAGATACTCTAGATGGCAGCTTTCTGGGGTCTGGAGAAGAGCTGGATCTACTGAGTGAGATTCTAGACAGCCTGAACGTGGAAACCAAGAGTGGCGACCTGCAGAGGGCCAGCCAGAGCTTAGACTGCTGTCAGCGAGGGGCGGCGTCAGAGAGCTGCTCCAGCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000002668-31-52,31-51-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.676
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCAGCAGGAGACTCAAGACT
R:
ATCCAGCTCTTCTCCAGACCC
Band lengths:
144-184
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types