BtaALTA0009159-2/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000013636 | DGKZ
Description
diacylglycerol kinase, zeta [Source:HGNC Symbol;Acc:HGNC:2857]
Coordinates
chr15:77245294-77245532:+
Coord C1 exon
chr15:77245294-77245373
Coord A exon
chr15:77245463-77245465
Coord C2 exon
chr15:77245466-77245532
Length
3 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
GCCTCTGCCTCTCTTGCCAGGAG
3' ss Score
10.5
Exon sequences
Seq C1 exon
CTGTGCCGCTGGGCACTGTGGTGGTCCCAGGAGACAGCGACCTGGAGCTGTGCCGCGCTCACATCGAGAGGCTCCGGCAG
Seq A exon
GAG
Seq C2 exon
CCCGAAGGTGCTGGAGCCAAGTCCCCGATGTGCCAGAAACTGTCCCCCAAGTGGTGCTTCCTCGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013636-33-36,33-35-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.074 A=NA C2=0.375
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGAGACAGCGACCTGGAG
R:
CACTTGGGGGACAGTTTCTGG
Band lengths:
106-109
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development