MmuALTA0005407-1/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000040479 | Dgkz
Description
diacylglycerol kinase zeta [Source:MGI Symbol;Acc:MGI:1278339]
Coordinates
chr2:91936702-91936937:-
Coord C1 exon
chr2:91936858-91936937
Coord A exon
NA
Coord C2 exon
chr2:91936702-91936771
Length
0 bp
Sequences
Splice sites
5' ss Seq
CGGGTAACT
5' ss Score
5.86
3' ss Seq
CTTTGCTTCTGTCTCAGCAGGAG
3' ss Score
8.56
Exon sequences
Seq C1 exon
CTGTGCCTCTGGGCACTGTGGTGGTCCCCGGAGACAGTGACCTGGAGCTCTGCCGCGCCCACATTGAGAGACTGCAGCGG
Seq A exon
NA
Seq C2 exon
GAGCCCGATGGGGCTGGAGCCAAGTCCCCGATGTGCCACCAACTCTCCTCCAAGTGGTGTTTCCTGGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040479-50-73,50-72-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.278 A=NA C2=0.375
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGACAGTGACCTGGAGCTCT
R:
ACCACTTGGAGGAGAGTTGGT
Band lengths:
108-111
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types