BtaALTA0009458-3/3 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000047794 | DNAH1
Description
dynein, axonemal, heavy chain 1 [Source:HGNC Symbol;Acc:HGNC:2940]
Coordinates
chr22:49045075-49045873:-
Coord C1 exon
chr22:49045694-49045873
Coord A exon
chr22:49045252-49045405
Coord C2 exon
chr22:49045075-49045251
Length
154 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGC
5' ss Score
7.93
3' ss Seq
TAGTCAGCTCTTCTCATCAGGTG
3' ss Score
3.92
Exon sequences
Seq C1 exon
GTGATGGAGTTCAAGTGCCTGCTGCTGTCTCTGTGTTTGTTCCACGGGAATGCCCTGGAGCGGCGTAAGTTTGGGCCCCTGGGCTTCAACATCCCCTACGAGTTCACAGACGGGGACCTGCGCATCTGCATCAGCCAGCTCAAGATGTTCCTGGACGAGTATGACCACATCCCCTACAAG
Seq A exon
GTGGCCAAAGTATTGGAGCTTCAGCTTCAGCATCAGTCCTTCCAGTGAATATTCAGGACTGATTTCCTTTGGGATGGACTGGTTGGATCTCCTTGCAGTCCAAGGGACTCTCACGGGTCTTCTCCAACACCACAGCTCAAAACCCACCCCATAG
Seq C2 exon
GTCCTTAAGTACACGGCAGGGGAGATCAACTATGGGGGCCGTGTCACTGACGACTGGGACCGCCGCTGCGTCATGAACATCCTAGAGGACTTCTACAGCCCCGAGGTGCTCTTCCCAGAGCATAGCTACAGCGCCTCGGGCGTTTACCACCAGATCCAGCCCACCTACGACCTCAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000047794-77-84,77-83,77-82-3/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(8.3=100)
A:
NA
C2:
PF0302810=Dynein_heavy=FE(8.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTACGAGTTCACAGACGGGGA
R:
GGCTGGATCTGGTGGTAAACG
Band lengths:
246-400
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development