BtaALTA0009458-1/3 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000047794 | DNAH1
Description
dynein, axonemal, heavy chain 1 [Source:HGNC Symbol;Acc:HGNC:2940]
Coordinates
chr22:49045075-49045873:-
Coord C1 exon
chr22:49045694-49045873
Coord A exon
NA
Coord C2 exon
chr22:49045075-49045251
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGC
5' ss Score
7.93
3' ss Seq
GCTCAAAACCCACCCCATAGGTC
3' ss Score
5.11
Exon sequences
Seq C1 exon
GTGATGGAGTTCAAGTGCCTGCTGCTGTCTCTGTGTTTGTTCCACGGGAATGCCCTGGAGCGGCGTAAGTTTGGGCCCCTGGGCTTCAACATCCCCTACGAGTTCACAGACGGGGACCTGCGCATCTGCATCAGCCAGCTCAAGATGTTCCTGGACGAGTATGACCACATCCCCTACAAG
Seq A exon
NA
Seq C2 exon
GTCCTTAAGTACACGGCAGGGGAGATCAACTATGGGGGCCGTGTCACTGACGACTGGGACCGCCGCTGCGTCATGAACATCCTAGAGGACTTCTACAGCCCCGAGGTGCTCTTCCCAGAGCATAGCTACAGCGCCTCGGGCGTTTACCACCAGATCCAGCCCACCTACGACCTCAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000047794-77-84,77-83,77-82-1/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(8.3=100)
A:
NA
C2:
PF0302810=Dynein_heavy=FE(8.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTACGAGTTCACAGACGGGGA
R:
ATAGTTGATCTCCCCTGCCGT
Band lengths:
118-137
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development