MmuALTA1005603-4/5 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000019027 | Dnah1
Description
dynein, axonemal, heavy chain 1 [Source:MGI Symbol;Acc:MGI:107721]
Coordinates
chr14:31263119-31263547:-
Coord C1 exon
chr14:31263368-31263547
Coord A exon
chr14:31263143-31263295
Coord C2 exon
chr14:31263119-31263142
Length
153 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGC
5' ss Score
10.08
3' ss Seq
CATTGTCCACTCACCCATAGGTT
3' ss Score
9.46
Exon sequences
Seq C1 exon
GTAGTGGAGTTCAAGTCCCTGCTGCTATCTCTGTGTTTGTTTCATGGAAATGCACTTGAACGCCGTAAATTTGGGCCCCTGGGTTTCAACATCCCCTATGAGTTCACAGATGGAGACCTGCGCATCTGCATTAGCCAGCTCAAGATGTTCCTGGATGAATATGAGGACATCCCCTATAAG
Seq A exon
GTTCTCAAGTATACAGCTGGAGAGATCAACTATGGTGGCCGTGTCACCGATGACTGGGACCGCCGTTGTGTCATGAACATACTAGAAGACTTCTACAACCCTGCTGTGCTCTCTTCTGAGCACAGCTACAGTAACTCTGGCATCTACCACCAG
Seq C2 exon
ATCCCACCCACCTATGACCTCAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000019027-88-93,88-92,88-91,88-90,88-89-4/5
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(12.4=100)
A:
NA
C2:
PF0302810=Dynein_heavy=FE(12.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAGTGGAGTTCAAGTCCCTGCT
R:
TTGAGGTCATAGGTGGGTGGG
Band lengths:
202-355
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types