BtaALTA0009459-1/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000047794 | DNAH1
Description
dynein, axonemal, heavy chain 1 [Source:HGNC Symbol;Acc:HGNC:2940]
Coordinates
chr22:49043305-49044142:-
Coord C1 exon
chr22:49044012-49044142
Coord A exon
NA
Coord C2 exon
chr22:49043305-49043656
Length
0 bp
Sequences
Splice sites
5' ss Seq
TCGGTAATC
5' ss Score
4.55
3' ss Seq
CCTCGCCACTGGCTCTGTAGGTA
3' ss Score
7.92
Exon sequences
Seq C1 exon
ATAGTGGAGGACGTGGCCCAAAACATTCTGATCAAGGTGCCCGACCCTGTCAACTTGCAGTGGGTCATGACCAAGTACCCTGTGCTGTATGAAGAGTCAATGAACACGGTGCTAGCACAGGAGGTCATTCG
Seq A exon
NA
Seq C2 exon
GTACAACCGGCTGCTACAAGTGATCACACAGTCGCTGAGAGACCTGCTCAAGGCCCTCAAGGGGCTGGTGGTGATGTCCTCACAGCTGGAGCTGATGGCTGCCAGCCTGTACAACAACTCTGTGCCCGAGCTCTGGAAGGCCAAGGCCTACCCGTCGCTTAAGCCACTGTCCTCATGGGTCCTGGACCTGCTGCAGCGCCTGGACTTCCTACAGACCTGGATCTCCGAGGGCATCCCAGCCGTCTTCTGGATCAGTGGCTTCTTCTTCCCCCAGGCTTTCCTGACAGGCACTCTGCAGAACTATGCCCGCAAATCTGTCATCTCCATCGACACCATCTCCTTTGATTTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000047794-80-88,80-87-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(6.1=100)
A:
NA
C2:
PF0302810=Dynein_heavy=FE(16.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACCAAGTACCCTGTGCTGT
R:
AGTTGTTGTACAGGCTGGCAG
Band lengths:
183-252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development