GgaALTA1010963-2/3 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000004297 | DNAH1
Description
dynein, axonemal, heavy chain 1 [Source:HGNC Symbol;Acc:HGNC:2940]
Coordinates
chr12:3101338-3101965:+
Coord C1 exon
chr12:3101338-3101468
Coord A exon
chr12:3101821-3101829
Coord C2 exon
chr12:3101830-3101965
Length
9 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACC
5' ss Score
8.66
3' ss Seq
ACAGCAGCTCTTTCTCTTAGGTA
3' ss Score
5.59
Exon sequences
Seq C1 exon
CTGGTGGAGGGGACTGCAAATGAGATCCTGGCAAAGCTGCCTGCCCCCATGGACCTGCAGGAGGTGATCTGCAAATACCCACTGCTCTACGAAGAGTCTATGAACACAGTGCTGGTGCAGGAGGTGATCAG
Seq A exon
GTACAACAG
Seq C2 exon
TCTCCTGGAGGTGATTGCTCAGACACTGAAGGATCTGCTGAAAGCTCTCAAGGGCCTGGTTGTGATGTCCTCTCAGCTGGAGCTGATGGCCAACAGCTTGTACAACAACTCCGTCCCCACTGTGTGGAACACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004297-83-83,83-82,83-81-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(6.1=100)
A:
NA
C2:
PF0302810=Dynein_heavy=FE(6.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCAGGAGGTGATCTGCAAA
R:
TGAGCAATCACCTCCAGGAGA
Band lengths:
98-107
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]