BtaALTA0009681-2/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000018579 | DOK1
Description
Bos taurus docking protein 1, 62kDa (downstream of tyrosine kinase 1) (DOK1), mRNA. [Source:RefSeq mRNA;Acc:NM_001024543]
Coordinates
chr11:10070526-10071072:-
Coord C1 exon
chr11:10071004-10071072
Coord A exon
chr11:10070653-10070654
Coord C2 exon
chr11:10070526-10070652
Length
2 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGTG
5' ss Score
5.56
3' ss Seq
TCTCTCGGCTCTTTCCCCAGAGA
3' ss Score
9.85
Exon sequences
Seq C1 exon
CCGGGGGCCATGGACGGGGCCGTGATGGAAGGGCCGCTGTTTTTGCAGAGTCAGCGTTTCGGGACCAAG
Seq A exon
AG
Seq C2 exon
ATGGAGGAAGACCTGGGCGGTTCTCTACCCGGCCAGTCCCCACGGTGTCGCGCGGCTCGAGTTCTTTGACCACAAGGGGTCTAGCTCTGGAGGTGGCCGAGGGAGCTCGCGCCGCCTGGACTGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018579-0-1,0-0-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.080
Domain overlap (PFAM):
C1:
PF0016924=PH=PU(13.9=80.0)
A:
NA
C2:
PF0016924=PH=PD(84.3=97.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGTTTTTGCAGAGTCAGCG
R:
TGTGGTCAAAGAACTCGAGCC
Band lengths:
108-110
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development