MmuALTA0005752-2/2 @ mm9
Alternative 3'ss
Gene
ENSMUSG00000068335 | Dok1
Description
docking protein 1 [Source:MGI Symbol;Acc:MGI:893587]
Coordinates
chr6:82982761-82983465:-
Coord C1 exon
chr6:82983365-82983465
Coord A exon
chr6:82983059-82983060
Coord C2 exon
chr6:82982761-82983058
Length
2 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGTT
5' ss Score
6.44
3' ss Seq
AGTCTTTCGTTCTTTCCCAGAGG
3' ss Score
7.4
Exon sequences
Seq C1 exon
AGCCCTCCGGGCCAGGAAGCGCGGAAGGAATCGCCTGGGCCATGGACGGGGCTGTGATGGAGGGTCCGCTTTTTCTGCAGAGTCAGCGCTTCGGGACCAAG
Seq A exon
AG
Seq C2 exon
GTGGAGGAAAACTTGGGCTGTGCTTTACCCAGCCAGTCCTCACGGCGTGGCGCGGCTGGAATTCTTTGATCACAAGGGGTCGAGCTCTAGAGGGGGTCGAGGCGGCTCTCGCCGTCTAGACTGCAAGATGATACGCCTGGCTGAATGTGTGAGCGTGGTGCCGGTGACTGTGGAGAGTCCCCCTGAGCCCGGCGCTGTTGCCTTCCGCCTGGACACCGCACAGCGCTCGCACCTGCTGGCGGCGGACGCCGTATCCAGCACCGCCTGGGTGCAGACTTTATGCAGAACCGCCTTTCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000068335-0-1,0-0-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.060
Domain overlap (PFAM):
C1:
PF0016924=PH=PU(13.9=80.0)
A:
NA
C2:
PF0016924=PH=PD(84.3=97.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTTCTGCAGAGTCAGCGCTT
R:
GATCAAAGAATTCCAGCCGCG
Band lengths:
102-104
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: