BtaALTA0009740-2/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000038691 | DPH7
Description
diphthamide biosynthesis 7 [Source:HGNC Symbol;Acc:HGNC:25199]
Coordinates
chr11:105575808-105577295:+
Coord C1 exon
chr11:105575808-105575895
Coord A exon
chr11:105577201-105577203
Coord C2 exon
chr11:105577204-105577295
Length
3 bp
Sequences
Splice sites
5' ss Seq
GAGGTCAGT
5' ss Score
7.7
3' ss Seq
GATGGCTTCCTTCTCTCTAGCAG
3' ss Score
7.15
Exon sequences
Seq C1 exon
GTGTCACGTTCCAGTGGCTGGTCATCCCCTCTTGGGTGTGGCAGATGCTTCTGGGTCCATAGAGCTCCTCCGCTTGTTGCCATCTGAG
Seq A exon
CAG
Seq C2 exon
GACACTTGGACACTACAGCCCTGCTCCCGCTTGGCCCTGGAAAAGCAGTGTCTGGCCTTGTCCTTGGACTGGTCCACTGGGAAAGCTGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000038691-4-4,4-3-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGGTCCATAGAGCTCCTCC
R:
GACAAGGCCAGACACTGCTTT
Band lengths:
100-103
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development