GgaALTA0004610-2/2 @ galGal3
Alternative 3'ss
Gene
ENSGALG00000008750 | WDR85
Description
NA
Coordinates
chr17:1973929-1974859:+
Coord C1 exon
chr17:1973929-1974015
Coord A exon
chr17:1974762-1974764
Coord C2 exon
chr17:1974765-1974859
Length
3 bp
Sequences
Splice sites
5' ss Seq
GAGGTGGGT
5' ss Score
7.07
3' ss Seq
CCTATTTCTTTTCTTTCCAGTAG
3' ss Score
8.08
Exon sequences
Seq C1 exon
TGCCACGTTCCGGTTGCAGAACATCCCATGGTTGGCATTGCAAACTCGACGGGTGCTGTGGAGTTCTGCCACCTGACTGGCAGTGAG
Seq A exon
TAG
Seq C2 exon
AAGAACAGCTGCATGTTGGAGCCTTGCTTCAGGGTCGATCTCGGTGCGCAACGCCTGGCCTTGTCCTTAGACTGGTCCACAGGACGTGAGCAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008750-0-2,0-1-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGAACATCCCATGGTTGGCA
R:
CCTGAAGCAAGGCTCCAACAT
Band lengths:
104-107
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]