BtaALTA0009750-2/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000005235 | DPP10
Description
Bos taurus dipeptidyl-peptidase 10 (non-functional) (DPP10), mRNA. [Source:RefSeq mRNA;Acc:NM_001078070]
Coordinates
chr2:67935914-67936151:+
Coord C1 exon
chr2:67935914-67935969
Coord A exon
chr2:67936070-67936074
Coord C2 exon
chr2:67936075-67936151
Length
5 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAGT
5' ss Score
9.66
3' ss Seq
AATATTTACCTTTTTTCAAGGGA
3' ss Score
5.97
Exon sequences
Seq C1 exon
CAGATTTTTCATTATTCGTATACTGCTTCGTATGTGATCTACAATATACACACTAG
Seq A exon
GGAAG
Seq C2 exon
TTTGGGAGTTAAATCCTCCAGAAGTAGAGGACTCTGTCCTGCAGTACGCGGCCTGGGGTGTCCAAGGGCAGCAGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005235-0-1,0-0-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0093016=DPPIV_N=PU(5.1=94.7)
A:
NA
C2:
PF0093016=DPPIV_N=FE(7.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGCTTCGTATGTGATCTACA
R:
CTGCCCTTGGACACCCCA
Band lengths:
106-111
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development