BtaALTA0009821-2/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000004754 | DSCAM
Description
Down syndrome cell adhesion molecule [Source:HGNC Symbol;Acc:HGNC:3039]
Coordinates
chr1:141805540-141814762:-
Coord C1 exon
chr1:141814625-141814762
Coord A exon
chr1:141805617-141805707
Coord C2 exon
chr1:141805540-141805616
Length
91 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
3' ss Seq
TGAAAAACAAAACCCAAAAGACT
3' ss Score
-4.73
Exon sequences
Seq C1 exon
ACCACACAGAGCCCCCAGATCCTCCTGAAATTGAGATCAAGGATGTGAAGGCACGTACCATCACCCTCAGGTGGACCATGGGCTTTGACGGGAACAGCCCCATCACGGGCTATGACATTGAATGCAAAAATAAATCAG
Seq A exon
ACTCCTGGGATTCTGCTCAGAGAACCAAAGACGTTTCCCCTCAGCTGAACTCGGCCACCATCATTGACATCCACCCTTCCTCCACCTACAG
Seq C2 exon
CATCCGCATGTACGCCAAGAACCGGATTGGCAAGAGTGAGCCTAGCAACGAGCTGTCCATCACCGCGGATGAGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004754-12-14,12-13-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.574 A=NA C2=NA
Domain overlap (PFAM):
C1:
PF0004116=fn3=PU(44.1=87.2)
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCCCAGATCCTCCTGAAAT
R:
CTCACTCTTGCCAATCCGGTT
Band lengths:
168-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development