RnoALTA0012786-2/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000027992 | Dscam
Description
DS cell adhesion molecule [Source:RGD Symbol;Acc:619992]
Coordinates
chr11:37123498-37129741:-
Coord C1 exon
chr11:37129613-37129741
Coord A exon
chr11:37123571-37123661
Coord C2 exon
chr11:37123498-37123570
Length
91 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
3' ss Seq
TGAAAAACAAAACCCAAAAGACT
3' ss Score
-4.73
Exon sequences
Seq C1 exon
AACCCCCAGACCCCCCCGAGATTGAGATCAAAGATGTCAAAGCCCGCACAATCACGCTCAGGTGGACCATGGGGTTTGATGGCAACAGCCCCATCACAGGCTACGACATTGAGTGCAAAAATAAATCAG
Seq A exon
ACTCCTGGGATTCTGCTCAAAGAACCAAAGATGTTTCCCCTCAGCTGAACTCGGCCACCATCATTGATATCCACCCTTCCTCCACCTACAG
Seq C2 exon
CATCCGCATGTACGCCAAGAACCGGATTGGCAAGAGTGAGCCCAGCAACGAGATCACCATCACGGCAGATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000027992-23-17,23-16-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.364 A=NA C2=0.593
Domain overlap (PFAM):
C1:
PF0004116=fn3=PU(47.1=93.2)
A:
NA
C2:
PF0004116=fn3=PD(51.7=78.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAAAGATGTCAAAGCCCGCA
R:
CCGTGATGGTGATCTCGTTGC
Band lengths:
167-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]