BtaALTA0010220-2/3 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000012148 | EHMT1
Description
Bos taurus euchromatic histone-lysine N-methyltransferase 1 (EHMT1), mRNA. [Source:RefSeq mRNA;Acc:NM_001099041]
Coordinates
chr11:105477756-105480791:-
Coord C1 exon
chr11:105480611-105480791
Coord A exon
chr11:105477890-105477892
Coord C2 exon
chr11:105477756-105477889
Length
3 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
3' ss Seq
TTGCTTGCCTTTTGTTTTAGCAG
3' ss Score
8.02
Exon sequences
Seq C1 exon
CACGCGGCGAGTAAGGACCCCAGGGAAGGCCGGGACGCCCGCGACCACGAGGAGCCGAAGGAGGAGCTGAGCAGGGGCGCCTCGGAGTTCGCACGCCAGCAGCTTTCACCCCCCTTCCCGTCCCTTCACCAGTCGCTACCTCAGAACCAATGCTACGTGGCCACCGCGAAGGCCCAGACAG
Seq A exon
CAG
Seq C2 exon
CTGCAGTATCTCGGAAGAAAAAGCGAAGAATGGGAACCTATAGCCTGGTTCCTAAGAAAAAGACCAAAGTGTTAAAGCAGAGGACGGTGATTGAGATGTTTAAGAGCATAACTCATTCCACGGGGGGTTCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012148-5-7,5-6,5-5-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.848
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGAACCAATGCTACGTGGC
R:
GGAACCAGGCTATAGGTTCCCA
Band lengths:
93-96
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development