DreALTA0010590-2/4 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000026634 | ehmt1b
Description
euchromatic histone-lysine N-methyltransferase 1b [Source:ZFIN;Acc:ZDB-GENE-080515-3]
Coordinates
chr21:14567612-14568142:-
Coord C1 exon
chr21:14567980-14568142
Coord A exon
chr21:14567746-14567748
Coord C2 exon
chr21:14567612-14567745
Length
3 bp
Sequences
Splice sites
5' ss Seq
TAGGTTACA
5' ss Score
-5.21
3' ss Seq
CAGACCTGTCTCTCCCTCAGTAG
3' ss Score
5.49
Exon sequences
Seq C1 exon
CTTTTGAACAGGGAAAATAAAGAGCCAGTCGTGGTAAAAGATGACAGTGCAGGCAAACCAGAGGCAGTGCAGCCTCAGCCATCTCTAATCCAGAATCAGCTACCTCAAAGCCAAACTGACGCCACATCTGTACCGAACACCACACCTGCCAAGCCACAAATAG
Seq A exon
TAG
Seq C2 exon
CAGCCGTATCAAGGAAGAAAAAAAGAAAGATGGGAACATATAGTCTTGTACCCAAGAAGAAAAACAAAGTCTTGAAACAACGCACAGTTCTGGAGATGTTTCAGCAGATATCCCAGTCTCCACCCAACCCTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000026634-17-8,17-7,17-6,17-5-2/4
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.982
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACACCTGCCAAGCCACAAATA
R:
TGTGCGTTGTTTCAAGACTTTGT
Band lengths:
108-111
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]