BtaALTA0010654-3/3 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000030246 | ENTPD8
Description
ectonucleoside triphosphate diphosphohydrolase 8 [Source:HGNC Symbol;Acc:HGNC:24860]
Coordinates
chr11:105698114-105699547:+
Coord C1 exon
chr11:105698114-105698165
Coord A exon
chr11:105699292-105699323
Coord C2 exon
chr11:105699324-105699547
Length
32 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
CGGGCACCCCGGCTCTACAGCGC
3' ss Score
4.76
Exon sequences
Seq C1 exon
CAGCCGGTCCAGCTCCCTCCTCACGGCCTCCCACTGCTCATCGACAGCCCAG
Seq A exon
CGCGGTCCTTGGCCCTGCCCGTCGACCAGCAG
Seq C2 exon
GAGTGGGCCGCCTGAGCCCCGGGGAGGACGAGGGGCGCTGCAGCCAGTGGAGTCGGGGTGCCCCCGCGGCCCCACGGGTGCCAGTCCTGCCCCCCAGCATGGGGCTGACCTGGAAGCAGCGGGTCTTCACGGCTCTGCTGGGCGCAGCAGCGGTCTCAGGCCTCACCGCGCTGCTTCTCGTCCTGGTGGGGACCATGAACGTCCTCCTGCCTCCAGACACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000030246-0-3,0-2,0-1-3/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0115012=GDA1_CD39=PU(1.9=19.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCCCACTGCTCATCGACAG
R:
CAGGACTGGCACCCGTGG
Band lengths:
115-147
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development