BtaEX0012936 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000030246 | ENTPD8
Description
ectonucleoside triphosphate diphosphohydrolase 8 [Source:HGNC Symbol;Acc:HGNC:24860]
Coordinates
chr11:105698114-105700395:+
Coord C1 exon
chr11:105698114-105698165
Coord A exon
chr11:105699629-105699746
Coord C2 exon
chr11:105700245-105700395
Length
118 bp
Sequences
Splice sites
3' ss Seq
GACCCCGGTGTCACCCCCAGTTT
3' ss Score
6.86
5' ss Seq
AAGGTCAGT
5' ss Score
8.68
Exon sequences
Seq C1 exon
CAGCCGGTCCAGCTCCCTCCTCACGGCCTCCCACTGCTCATCGACAGCCCAG
Seq A exon
TTTGGGATCGTGTTCGACGCTGGGTCCTCCCACACATCCCTCTTTGTGTATCAGTGGCCGGCCAACAAGGAGAACGACACCGGCATAGTCAGCCAGGCCCTGGCCTGCCAGGCGGAAG
Seq C2 exon
GGCCTGGAATCTCGTCTTACGCCTCCGACCCTGCGCGGGTTGGCGAGAGCCTGCAGGGCTGCCTGGAGGAGGCGCTAGCACTGATCCCAAAGGCCAAGCATCATGAGACACCCATGTTCCTGGGGGCCACTGCAGGCATGCGGCTGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000030246_MULTIEX1-2/2=C1-C2
Average complexity
C2*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF0115012=GDA1_CD39=FE(9.1=100)
C2:
PF0115012=GDA1_CD39=FE(11.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTCCAGCTCCCTCCTCAC
R:
AGTGGCCCCCAGGAACATG
Band lengths:
178-296
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development