GgaEX1002142 @ galGal3
Exon Skipping
Gene
ENSGALG00000008936 | F1NV60_CHICK
Description
NA
Coordinates
chr17:1318628-1319813:+
Coord C1 exon
chr17:1318628-1318742
Coord A exon
chr17:1318926-1319043
Coord C2 exon
chr17:1319663-1319813
Length
118 bp
Sequences
Splice sites
3' ss Seq
CCGTCGGCCTCTCTCCGCAGTAC
3' ss Score
9.68
5' ss Seq
ATGGTGAGA
5' ss Score
7.23
Exon sequences
Seq C1 exon
GCGGCCCGTGCGCCCGGCGGCCGCGCTGCCGGTGCTGGCCGGGCTGGCCGTGCTGGTGACCGCCGCCCTCCTCCTGGTGCTGACCGCGTCCCGGGACCGTCCCGTCAGGAAGAAA
Seq A exon
TACGGCCTGGTGTTCGACGCCGGCTCCACGCACACGGCTCTCTACGTCTACCAGTGGTCTGCAGACAAGGAGAACGGCACGGGCATCGTCTCCCAGGTGGAGTCCTGCACTGTGAATG
Seq C2 exon
GATCTGGCATTTCCAGCTATGCAGATAACCCCGCTGGAGCTGGAGCCAGCCTGAAGCCCTGCCTGGCCAAGGCCATGACAGTCATCCCTGCGGAGCAGCAAGGGGAGACACCCACCTACCTGGGGGCCACAGCGGGCATGCGGCTGCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008936-'0-3,'0-1,1-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=60%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0115012=GDA1_CD39=PU(1.6=18.4)
A:
PF0115012=GDA1_CD39=FE(9.1=100)
C2:
PF0115012=GDA1_CD39=FE(11.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCCTCCTGGTGCTGACC
R:
CTGTGGCCCCCAGGTAGG
Band lengths:
181-299
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]