GgaEX1002142 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NV60]
Coordinates
chr17:927031-928274:+
Coord C1 exon
chr17:927031-927203
Coord A exon
chr17:927387-927504
Coord C2 exon
chr17:928124-928274
Length
118 bp
Sequences
Splice sites
3' ss Seq
CCGTCGGCCTCTCTCCGCAGTAC
3' ss Score
9.68
5' ss Seq
ATGGTGAGA
5' ss Score
7.23
Exon sequences
Seq C1 exon
CCCCGCGGGTTCCGCCCGAGGCGCCGTGCCGTGCCGGCCCTGCGGAGCGCTCCGACATGCGGCCCGTGCGCCCGGCGGCCGCGCTGCCGGTGCTGGCCGGGCTGGCCGTGCTGGTGACCGCCGCCCTCCTCCTGGTGCTGACCGCGTCCCGGGACCGTCCCGTCAGGAAGAAA
Seq A exon
TACGGCCTGGTGTTCGACGCCGGCTCCACGCACACGGCTCTCTACGTCTACCAGTGGTCTGCAGACAAGGAGAACGGCACGGGCATCGTCTCCCAGGTGGAGTCCTGCACTGTGAATG
Seq C2 exon
GATCTGGCATTTCCAGCTATGCAGATAACCCCGCTGGAGCTGGAGCCAGCCTGAAGCCCTGCCTGGCCAAGGCCATGACAGTCATCCCTGCGGAGCAGCAAGGGGAGACACCCACCTACCTGGGGGCCACAGCGGGCATGCGGCTGCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008936-'1-2,'1-0,2-2
Average complexity
S
Mappability confidence:
100%=100=80%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0115012=GDA1_CD39=PU(1.6=17.9)
A:
PF0115012=GDA1_CD39=FE(9.1=100)
C2:
PF0115012=GDA1_CD39=FE(11.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCCTCCTGGTGCTGACC
R:
CTGTGGCCCCCAGGTAGG
Band lengths:
181-299
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]