RnoEX6015788 @ rn6
Exon Skipping
Gene
ENSRNOG00000009239 | Entpd8
Description
ectonucleoside triphosphate diphosphohydrolase 8 [Source:RGD Symbol;Acc:1561793]
Coordinates
chr3:2290293-2291596:+
Coord C1 exon
chr3:2290293-2290434
Coord A exon
chr3:2290523-2290640
Coord C2 exon
chr3:2291446-2291596
Length
118 bp
Sequences
Splice sites
3' ss Seq
TCTGCCCGTGTTGTCCCTAGTTT
3' ss Score
10.23
5' ss Seq
AAGGTCAGT
5' ss Score
8.68
Exon sequences
Seq C1 exon
CTCAGCCCCTCCCACCATGAGACTTTCCTGGAAGGAACGGGTCTTCATGGTCCTGTTGGGAGTTGCAGCAGCTTCTGGCCTCACCATGCTCATCCTCATCCTGGTGAAAGCAACCAATGTTCTCCTGCCTGCAGACACCAAG
Seq A exon
TTTGGGATCCTGTTTGACGCCGGCTCCTCCCACACATCACTGTTTGTGTACCAGTGGCCAGCAAACAAGGAGAAGGACACAGGAGTGGTCAGCCAGGCCCTGGCTTGCCAGGTAGAAG
Seq C2 exon
GACCGGGAATCTCTTCCTACACCTCTGACCCGACACAGGCTGGGGAGAGCCTGAAGAGCTGCCTGCAGGAGGCGCTGGCACTGATCCCACAGACCCAGCATCCAGTGACGCCCACATTCCTGGGGGCCACAGCAGGAATGAGGCTGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009239-'3-6,'3-2,4-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.020
Domain overlap (PFAM):
C1:
PF0115012=GDA1_CD39=PU(1.9=19.0)
A:
PF0115012=GDA1_CD39=FE(9.1=100)
C2:
PF0115012=GDA1_CD39=FE(11.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCCTCCCACCATGAGACTTT
R:
GAATGTGGGCGTCACTGGATG
Band lengths:
256-374
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]