GgaEX0026386 @ galGal3
Exon Skipping
Gene
ENSGALG00000021274 | F1NJE7_CHICK
Description
NA
Coordinates
chr17:1330017-1331992:-
Coord C1 exon
chr17:1331857-1331992
Coord A exon
chr17:1330906-1331023
Coord C2 exon
chr17:1330017-1330167
Length
118 bp
Sequences
Splice sites
3' ss Seq
GTCTTGGTTGTTCCTTCCAGTAC
3' ss Score
7.33
5' ss Seq
AGGGTCAGT
5' ss Score
5.85
Exon sequences
Seq C1 exon
GTGCCTTCCCATGATGTTCGTTAACAAGAAGCTCTTCACCACCGCCCTCCTCGGGCTGCTGGTCACACTGTCCATCATCGCCCTCATCCTCAGCCTGGTGAGGGTTGAAGATGTCACTCTGCCACCCACAGTCCAG
Seq A exon
TACGGGATGGTGTTTGATGCAGGCTCATCCCACACCTCTCTGTTTGTCTACGAGTGGGACTCGGACAAGCAGAACAACACCGGTGTGGTCAGCCAGACCTTGTCCTGTGATGTCCAGG
Seq C2 exon
GGCCAGGCATATCAAGCTATGCCGATGATCCCCCAAAAGCTGGTGATTCCCTAAGAGAGTGCCTGGATGAAGCCCTGAAGGTCATTCCTGCTGCAAAGCAGAGGGATGTCTCAGCTTACTTCGGAGCGACAGCAGGCATGAGGCTACTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000021274_CASSETTE1
Average complexity
S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.020
Domain overlap (PFAM):
C1:
PF0115012=GDA1_CD39=PU(1.6=17.9)
A:
PF0115012=GDA1_CD39=FE(9.1=100)
C2:
PF0115012=GDA1_CD39=FE(11.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAAGAAGCTCTTCACCACCG
R:
TCGCTCCGAAGTAAGCTGAGA
Band lengths:
242-360
Functional annotations
There are 0 annotated functions for this event