HsaEX6064186 @ hg38
Exon Skipping
Gene
ENSG00000054179 | ENTPD2
Description
ectonucleoside triphosphate diphosphohydrolase 2 [Source:HGNC Symbol;Acc:HGNC:3364]
Coordinates
chr9:137051510-137054045:-
Coord C1 exon
chr9:137053881-137054045
Coord A exon
chr9:137052231-137052348
Coord C2 exon
chr9:137051510-137051660
Length
118 bp
Sequences
Splice sites
3' ss Seq
TCCCTCCCCCTCCCCCGCAGTAT
3' ss Score
10.17
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
CCGCACTCTCCGGGTCCACGCATCGTCCTCCCGCGCGCCCGCCCGCCCATGGCCGGGAAGGTGCGGTCACTGCTGCCGCCGCTGCTGCTGGCCGCCGCGGGCCTCGCCGGCCTCCTACTGCTGTGCGTCCCCACCCGCGACGTCCGGGAGCCGCCCGCCCTCAAG
Seq A exon
TATGGCATCGTCCTGGACGCTGGTTCTTCACACACGTCCATGTTTATCTACAAGTGGCCGGCAGACAAGGAGAACGACACAGGCATTGTGGGCCAGCACAGCTCCTGTGATGTTCCAG
Seq C2 exon
GTGGGGGCATCTCCAGCTATGCAGACAACCCTTCTGGGGCCAGCCAGAGTCTTGTTGGATGCCTCGAACAGGCGCTTCAGGATGTGCCCAAAGAGAGACACGCGGGCACACCCCTCTACCTGGGAGCCACAGCGGGTATGCGCCTGCTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000054179-'0-1,'0-0,2-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.075 C2=0.000
Domain overlap (PFAM):
C1:
PF0115012=GDA1_CD39=PU(2.3=20.5)
A:
PF0115012=GDA1_CD39=FE(11.0=100)
C2:
PF0115012=GDA1_CD39=FE(14.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTCCGGGTCCACGCATC
R:
TCTTTGGGCACATCCTGAAGC
Band lengths:
254-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains