MmuEX0016915 @ mm9
Exon Skipping
Gene
ENSMUSG00000015085 | Entpd2
Description
ectonucleoside triphosphate diphosphohydrolase 2 [Source:MGI Symbol;Acc:MGI:1096863]
Coordinates
chr2:25251394-25253671:+
Coord C1 exon
chr2:25251394-25251609
Coord A exon
chr2:25252916-25253033
Coord C2 exon
chr2:25253521-25253671
Length
118 bp
Sequences
Splice sites
3' ss Seq
CCTACCACATCCACCCACAGTAT
3' ss Score
5.34
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
Exon sequences
Seq C1 exon
GTTACAGCCCCGCCCCGGAGCCTAACTCTGGGGCCCCGGCCACCGGGCCTCCCGCTGCCTGCTGTCCGGGGTCCCTGCTGTGTTCTCCCGCGTGCTCCCATGGCTGGAAAGTTGGTGTCACTGGTGCCACCCCTGCTGCTGGCTGCCGTGGGCCTCGCCGGCCTCCTGCTACTGTGCGTCCCTACCCAAGACGTCCGGGAGCCGCCCGCCCTCAAG
Seq A exon
TATGGCATCGTTCTGGATGCTGGCTCTTCACACACATCCATGTTTGTCTACAAGTGGCCAGCGGACAAGGAAAATGACACAGGTATCGTGGGCCAGCACAGCTCTTGCGATGTTCGAG
Seq C2 exon
GTGGTGGCATCTCCAGCTACGCAAATGACCCTTCTAGGGCAGGCCAGAGTCTGGTTGAATGTCTTGAACAGGCACTTCGGGATGTGCCCAAAGACAGATATGCCAGCACTCCACTCTACCTGGGAGCTACAGCAGGCATGCGCCTACTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000015085_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.062 C2=0.000
Domain overlap (PFAM):
C1:
PF140291=DUF4244=WD(100=71.8),PF0115012=GDA1_CD39=PU(7.8=20.5)
A:
PF0115012=GDA1_CD39=FE(38.2=100)
C2:
PF0115012=GDA1_CD39=FE(11.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCTGGAAAGTTGGTGTCAC
R:
GCTGTAGCTCCCAGGTAGAGT
Band lengths:
249-367
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: