GgaEX1022499 @ galGal4
Exon Skipping
Gene
ENSGALG00000009058 | ENTPD2
Description
ectonucleoside triphosphate diphosphohydrolase 2 precursor [Source:RefSeq peptide;Acc:NP_990285]
Coordinates
chr17:402427-406387:+
Coord C1 exon
chr17:402427-402563
Coord A exon
chr17:405749-405866
Coord C2 exon
chr17:406237-406387
Length
118 bp
Sequences
Splice sites
3' ss Seq
CCCCAGCTCTCCGCCCGCAGTAC
3' ss Score
6.94
5' ss Seq
AGGGTAAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
AGCGGCAGCGCCCGCCCGGCCCCGCCATGGCCCGCCGGGCCGCCGCCGTGCTGCTGCTGCTTGCCCTCGGCTGCCTCCTGGGCATCCTCCTGCTCTGCCTCGGCTCCGGAGACGCGCGCGGCCCGCCGAGTTTCAAG
Seq A exon
TACGGCATCGTGCTGGACGCCGGATCCTCCCACACGGCCGTGTTCATCTACAAGTGGCCCGCGGACAAGGAGAACGACACTGGGGTGGTCAGCGAGCACAGCATGTGCGACGTGGAGG
Seq C2 exon
GTCCTGGCATCTCCAGCTACAGCTCCAAACCTCCGGCTGCTGGGAAGAGCTTAGAGCACTGCCTGAGCCAGGCTATGAGAGATGTGCCCAAGGAGAAGCACGCAGACACTCCGCTCTACCTGGGTGCCACAGCTGGCATGCGCCTGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009058_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.075 C2=0.000
Domain overlap (PFAM):
C1:
PF0115012=GDA1_CD39=PU(1.4=16.2)
A:
PF0115012=GDA1_CD39=FE(9.0=100)
C2:
PF0115012=GDA1_CD39=FE(11.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGTGCTGCTGCTGCTTG
R:
AGCTGTGGCACCCAGGTAG
Band lengths:
226-344
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]