MmuEX0016915 @ mm10
Exon Skipping
Gene
ENSMUSG00000015085 | Entpd2
Description
ectonucleoside triphosphate diphosphohydrolase 2 [Source:MGI Symbol;Acc:MGI:1096863]
Coordinates
chr2:25396408-25398151:+
Coord C1 exon
chr2:25396408-25396508
Coord A exon
chr2:25397396-25397477
Coord C2 exon
chr2:25398001-25398151
Length
82 bp
Sequences
Splice sites
3' ss Seq
CCTACCACATCCACCCACAGTAT
3' ss Score
5.34
5' ss Seq
CAGGTATCG
5' ss Score
9.18
Exon sequences
Seq C1 exon
GCCCCAAGTCCAGCGCCATTTCCAGGCAGCATTTCGAGCACGCCGTTAGAGAAGGGCTTTGGTTCTAGACAAAGCTCAAGATAAGGGACAGCACACACTAG
Seq A exon
TATGGCATCGTTCTGGATGCTGGCTCTTCACACACATCCATGTTTGTCTACAAGTGGCCAGCGGACAAGGAAAATGACACAG
Seq C2 exon
GTGGTGGCATCTCCAGCTACGCAAATGACCCTTCTAGGGCAGGCCAGAGTCTGGTTGAATGTCTTGAACAGGCACTTCGGGATGTGCCCAAAGACAGATATGCCAGCACTCCACTCTACCTGGGAGCTACAGCAGGCATGCGCCTACTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000015085-'2-1,'2-0,3-1
Average complexity
C3*
Mappability confidence:
86%=100=75%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.050 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF0115012=GDA1_CD39=FE(9.1=100)
C2:
PF0115012=GDA1_CD39=FE(11.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCATTTCCAGGCAGCATTTC
R:
CATCCCGAAGTGCCTGTTCAA
Band lengths:
171-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types