BtaEX6047593 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000048125 | ENTPD2
Description
Bos taurus ectonucleoside triphosphate diphosphohydrolase 2 (ENTPD2), mRNA. [Source:RefSeq mRNA;Acc:NM_001105648]
Coordinates
chr11:106183598-106185920:+
Coord C1 exon
chr11:106183598-106183743
Coord A exon
chr11:106185057-106185174
Coord C2 exon
chr11:106185770-106185920
Length
118 bp
Sequences
Splice sites
3' ss Seq
GACCCCCACCCCACCCGCAGTAT
3' ss Score
6.91
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
CCGTGCACGCCGGGCCCGCCTGCGCACCCATGGCCGGGAAGGCGCTGTCGCTGCTGCCACCGCTGCTGCTGGCCGCCGCCGGCCTCGCCGGCCTCCTGCTGCTGTGCGTCCCCACCCGCGACATCCGGGAGCCGCCCGCCCTCAAG
Seq A exon
TATGGCATCGTCCTGGATGCGGGCTCTTCCCACACGTCCATGTTCATCTACAAGTGGCCGGCGGACAAAGAGAATGACACAGGCATCGTGGGCCAGCACAGCTCCTGCGACGCGCAAG
Seq C2 exon
GTGGAGGCATCTCTAGCTATGCTGACAACCCTTCTGGAGCCGGGCAGAGCCTTGTGGAATGCCTGAACCAGGCGCTTCGGGACGTGCCCAAGGAGAGACACGCGGGCACGCCACTCTACCTGGGAGCCACGGCAGGCATGCGCCTGCTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000048125-'0-1,'0-0,2-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.075 C2=0.000
Domain overlap (PFAM):
C1:
PF0115012=GDA1_CD39=PU(1.9=20.5)
A:
PF0115012=GDA1_CD39=FE(9.2=100)
C2:
PF0115012=GDA1_CD39=FE(11.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCTGCTGCTGTGCGTC
R:
CCGTGGCTCCCAGGTAGAG
Band lengths:
186-304
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]