GgaEX1022523 @ galGal4
Exon Skipping
Gene
ENSGALG00000008932 | ENTPD8
Description
ectonucleoside triphosphate diphosphohydrolase 8 [Source:RefSeq peptide;Acc:NP_989578]
Coordinates
chr17:921954-923564:-
Coord C1 exon
chr17:923445-923564
Coord A exon
chr17:922900-923017
Coord C2 exon
chr17:921954-922104
Length
118 bp
Sequences
Splice sites
3' ss Seq
CCATCAGCCTCTCTCCGCAGTAC
3' ss Score
7.7
5' ss Seq
ATGGTGAGA
5' ss Score
7.23
Exon sequences
Seq C1 exon
ATGGAGTACAAAGGCAAGGTTGTCGCAGGTCTCCTGACAGCCACCTGTGTCTTCAGCATCATTGCCCTCATTCTGAGTGCTGTAGATGTGAAGGATGTGTTTCTGCCTCCTGGCACGAAG
Seq A exon
TACGGCCTGGTGTTCGACGCCGGCTCCACGCACACGGCTCTCTATGTCTACCAGTGGCCTGCAGACAAGGAGAACGGCACGGGCATCGTCTCCCAGGTGGAGTCCTGCACTGTGAATG
Seq C2 exon
GATCTGGCATCTCCAGCTACGCAGATGATCCCGCTGGAGCAGGTGCCATCCTGAAGCCCTGCCTGGACAAAGCCATGACAGTTATCCCTGTAGAGCAGCAGTGGCAGACACCCACCTACCTGGGGGCCACAGCGGGCATGCGGCTGCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008932-'0-7,'0-4,2-7
Average complexity
S
Mappability confidence:
100%=100=80%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0115012=GDA1_CD39=PU(1.2=12.5)
A:
PF0115012=GDA1_CD39=FE(9.1=100)
C2:
PF0115012=GDA1_CD39=FE(11.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACAAAGGCAAGGTTGTCGCA
R:
CTGTGGCCCCCAGGTAGG
Band lengths:
246-364
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]