HsaEX6064296 @ hg38
Exon Skipping
Gene
ENSG00000188833 | ENTPD8
Description
ectonucleoside triphosphate diphosphohydrolase 8 [Source:HGNC Symbol;Acc:HGNC:24860]
Coordinates
chr9:137437159-137438305:-
Coord C1 exon
chr9:137438160-137438305
Coord A exon
chr9:137437967-137438084
Coord C2 exon
chr9:137437159-137437309
Length
118 bp
Sequences
Splice sites
3' ss Seq
TCATCCCACTGTCTCCCCAGTTT
3' ss Score
8.2
5' ss Seq
AAGGTTAGT
5' ss Score
8.54
Exon sequences
Seq C1 exon
GAACCAGTACCACCTGCACCATGGGGCTGTCCCGGAAGGAGCAGGTCTTCTTGGCCCTGCTGGGGGCCTCGGGGGTCTCAGGCCTCACGGCACTCATTCTCCTCCTGGTGGAGGCCACCAGCGTGCTCCTGCCCACAGACATCAAG
Seq A exon
TTTGGGATCGTGTTTGATGCGGGCTCCTCCCACACGTCCCTCTTCCTGTATCAGTGGCTGGCGAACAAGGAGAATGGCACGGGTGTGGTCAGCCAGGCCCTGGCCTGCCAGGTGGAAG
Seq C2 exon
GGCCTGGAATCTCCTCCTACACTTCTAATGCTGCACAGGCTGGTGAGAGCCTGCAGGGCTGCTTGGAGGAGGCGCTGGTGCTGATCCCAGAGGCCCAGCATCGGAAAACACCCACGTTCCTGGGGGCCACGGCTGGCATGAGGTTGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000188833-'3-5,'3-4,4-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.008
Domain overlap (PFAM):
C1:
PF0115012=GDA1_CD39=PU(2.5=19.0)
A:
PF0115012=GDA1_CD39=FE(12.1=100)
C2:
PF0115012=GDA1_CD39=FE(15.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCAGTACCACCTGCACCAT
R:
TGGGTGTTTTCCGATGCTGG
Band lengths:
258-376
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains