BtaALTA0010838-2/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000006448 | ERI2
Description
ERI1 exoribonuclease family member 2 [Source:HGNC Symbol;Acc:HGNC:30541]
Coordinates
chr25:18668627-18668854:-
Coord C1 exon
chr25:18668787-18668854
Coord A exon
chr25:18668702-18668706
Coord C2 exon
chr25:18668627-18668701
Length
5 bp
Sequences
Splice sites
5' ss Seq
CTAGTAAGT
5' ss Score
8.78
3' ss Seq
GACACTCTGATGTTTTGCAGAGC
3' ss Score
8.01
Exon sequences
Seq C1 exon
GCAGCTTGGATTAATTAGGAGAAAATCAATTCCACCAGCAAATGGAAACCTAGGAAGAAGCAAATCTA
Seq A exon
AGCAG
Seq C2 exon
TTGTTTGACTACTTAATCATCATTGATTTTGAGTCAACATGTTGGAATGATGGGAAACGCCACCGGAGTCAGGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006448-2-3,2-2-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0092919=RNase_T=PU(10.1=70.4)

Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAAATGGAAACCTAGGAAGAAGC
R:
GTGGCGTTTCCCATCATTCCA
Band lengths:
94-99
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development