Special

MmuALTA0006547-2/2 @ mm9

Alternative 3'ss

Gene
Description
exoribonuclease 2 [Source:MGI Symbol;Acc:MGI:1918401]
Coordinates
chr7:126935779-126936012:-
Coord C1 exon
chr7:126935945-126936012
Coord A exon
chr7:126935858-126935862
Coord C2 exon
chr7:126935779-126935857
Length
5 bp
Sequences
Splice sites
5' ss Seq
TGAGTAAGT
5' ss Score
8.82
3' ss Seq
AACACTGTGGTCTTTTGCAGAAC
3' ss Score
10.16
Exon sequences
Seq C1 exon
GCGGCTTGGATTAATTAGGAGAAAGTCAGTTACACCAGCAAGTGGAAATCCAGGAGGGAGCAGATTGA
Seq A exon
AACAG
Seq C2 exon
TTGTATGCCTACTTAATTGTCGTTGACTTTGAGTCTACCTGCTGGAATGATGGGAAGCACCACAGTAGCCCTGAAATAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030929-1-2,1-1-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact

Protein isoform when splice site is used (Ref)

No structure available
Features
Disorder rate (Iupred):
  C1=0.035 A=NA C2=0.000
Domain overlap (PFAM):

C1:
PF0092919=RNase_T=PU(7.1=41.7)
A:
NA
C2:
NO


Main Inclusion Isoform:


Main Skipping Isoform:


Other Inclusion Isoforms:


Other Skipping Isoforms:
NA
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTCAGTTACACCAGCAAGTG
R:
GTGCTTCCCATCATTCCAGCA
Band lengths:
105-110
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]


SPECIAL DATASETS

  • Pre-implantation embryo development
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types