MmuINT0058879 @ mm9
Intron Retention
Gene
ENSMUSG00000030929 | Eri2
Description
exoribonuclease 2 [Source:MGI Symbol;Acc:MGI:1918401]
Coordinates
chr7:126935779-126936012:-
Coord C1 exon
chr7:126935945-126936012
Coord A exon
chr7:126935863-126935944
Coord C2 exon
chr7:126935779-126935862
Length
82 bp
Sequences
Splice sites
5' ss Seq
TGAGTAAGT
5' ss Score
8.82
3' ss Seq
AACACTGTGGTCTTTTGCAGAAC
3' ss Score
10.16
Exon sequences
Seq C1 exon
GCGGCTTGGATTAATTAGGAGAAAGTCAGTTACACCAGCAAGTGGAAATCCAGGAGGGAGCAGATTGA
Seq A exon
GTAAGTCCCACGCTTACGTTACAGTTTGAAGCCTTGCCCTTGGAACATCGTCGGAACCTAAGAACACTGTGGTCTTTTGCAG
Seq C2 exon
AACAGTTGTATGCCTACTTAATTGTCGTTGACTTTGAGTCTACCTGCTGGAATGATGGGAAGCACCACAGTAGCCCTGAAATAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030929-Eri2:NM_027698:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.035 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0092919=RNase_T=PU(7.1=41.7)
A:
NA
C2:
PF0092919=RNase_T=PU(11.1=72.4)
Main Inclusion Isoform:
NA

Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGGCTTGGATTAATTAGGAGA
R:
CAGGGCTACTGTGGTGCTTC
Band lengths:
146-228
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: