Special

HsaINT0057793 @ hg19

Intron Retention

Gene
Description
ERI1 exoribonuclease family member 2 [Source:HGNC Symbol;Acc:30541]
Coordinates
chr16:20814755-20814992:-
Coord C1 exon
chr16:20814925-20814992
Coord A exon
chr16:20814839-20814924
Coord C2 exon
chr16:20814755-20814838
Length
86 bp
Sequences
Splice sites
5' ss Seq
CCAGTGAGT
5' ss Score
8.28
3' ss Seq
AACAACTTGATCTTTTGCAGAGC
3' ss Score
7.8
Exon sequences
Seq C1 exon
GCAGCTTGGATTAATTAGGAGAAAGTCAATTGCGCCAGCAAATGGAAATCTCGGAAGAAGCAAATCCA
Seq A exon
GTGAGTAGTATGCTTAGTTTCTTTGCATTTTGTAGCCTTGCATTTTCAGCACTGGTAAAGCATAAGAACAACTTGATCTTTTGCAG
Seq C2 exon
AGCAGTTGTTTGACTACTTAATTGTCATTGATTTTGAATCGACATGCTGGAATGATGGGAAGCACCACCATAGCCAGGAAATAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000196678-ERI2:NM_001142725:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact

ORF disruption upon sequence inclusion

No structure available
Features
Disorder rate (Iupred):
  C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):

C1:
NO
A:
NA
C2:
PF0092919=RNase_T=PU(11.1=72.4)


Main Inclusion Isoform:
NA


Main Skipping Isoform:


Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGCTTGGATTAATTAGGAGAAAGT
R:
TATTTCCTGGCTATGGTGGTGC
Band lengths:
151-237
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]


SPECIAL DATASETS

  • Autistic and control brains
  • Pre-implantation embryo development