RnoINT0056305 @ rn6
Intron Retention
Gene
ENSRNOG00000014673 | Eri2
Description
ERI1 exoribonuclease family member 2 [Source:RGD Symbol;Acc:1583889]
Coordinates
chr1:189548261-189548494:-
Coord C1 exon
chr1:189548427-189548494
Coord A exon
chr1:189548345-189548426
Coord C2 exon
chr1:189548261-189548344
Length
82 bp
Sequences
Splice sites
5' ss Seq
TCAGTAAGT
5' ss Score
9.14
3' ss Seq
AATACCACGGTCTTTTGCAGGAC
3' ss Score
7.07
Exon sequences
Seq C1 exon
GCAGCTTGGATTAATTAGGAGAAAGTCAGTTACACCAGCAAGTGGAAATCCAGGAGGAAGCAGATTCA
Seq A exon
GTAAGTCCCATGTTTACTTTGCAGTTTGAAGCCTTGCTCTTGGAACATGGACAGGACCTCTGAATACCACGGTCTTTTGCAG
Seq C2 exon
GACAGCTGTATGACTACTTAATTGTTGTTGATTTTGAGTCTACCTGCTGGAATGACGGGAAGCACCACAGTAGCCCTGAAATAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014673:ENSRNOT00000019747:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0092919=RNase_T=PU(11.1=72.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGCTTGGATTAATTAGGAGAAAGT
R:
CAGGGCTACTGTGGTGCTTC
Band lengths:
146-228
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]