Special

RnoEX0032984 @ rn6

Exon Skipping

Gene
Description
ERI1 exoribonuclease family member 2 [Source:RGD Symbol;Acc:1583889]
Coordinates
chr1:189548261-189549891:-
Coord C1 exon
chr1:189549869-189549891
Coord A exon
chr1:189548427-189548494
Coord C2 exon
chr1:189548261-189548344
Length
68 bp
Sequences
Splice sites
3' ss Seq
CCTGTGTCTTGCATTTTTAGGCA
3' ss Score
10.93
5' ss Seq
TCAGTAAGT
5' ss Score
9.14
Exon sequences
Seq C1 exon
ATGGCGACCAAGCGGCTGGCACG
Seq A exon
GCAGCTTGGATTAATTAGGAGAAAGTCAGTTACACCAGCAAGTGGAAATCCAGGAGGAAGCAGATTCA
Seq C2 exon
GACAGCTGTATGACTACTTAATTGTTGTTGATTTTGAGTCTACCTGCTGGAATGACGGGAAGCACCACAGTAGCCCTGAAATAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014673_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact

ORF disruption upon sequence exclusion

No structure available
Features
Disorder rate (Iupred):
  C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):

C1:
NO
A:
NO
C2:
PF0092919=RNase_T=PU(11.1=72.4)


Main Inclusion Isoform:


Main Skipping Isoform:
NA


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]