HsaEX0023063 @ hg19
Exon Skipping
Gene
ENSG00000196678 | ERI2
Description
ERI1 exoribonuclease family member 2 [Source:HGNC Symbol;Acc:30541]
Coordinates
chr16:20814755-20817267:-
Coord C1 exon
chr16:20817037-20817267
Coord A exon
chr16:20814925-20814992
Coord C2 exon
chr16:20814755-20814838
Length
68 bp
Sequences
Splice sites
3' ss Seq
GGATTGCTTCACATTTTTAGGCA
3' ss Score
5.55
5' ss Seq
CCAGTGAGT
5' ss Score
8.28
Exon sequences
Seq C1 exon
AAAGGGTACACTCGCCAGCAGTTTTGCCAGGAGAGTACACTGAACAAAGGAGACAGGGTCATTTATAACGTGGCGCGTCCACCCTACTGCTGTGTCCGGTTTCCTTTGGCTGGAACGGGACCTCACATTCTGTATTTGTCCCGACTGACTAGCAACATAGAACTTTTTAAAAGAGGCAAAGGCAGAGGAGAACAAAGGAAGAAGGAAGTAACTTGTGGAATGCTGAGAAAG
Seq A exon
GCAGCTTGGATTAATTAGGAGAAAGTCAATTGCGCCAGCAAATGGAAATCTCGGAAGAAGCAAATCCA
Seq C2 exon
AGCAGTTGTTTGACTACTTAATTGTCATTGATTTTGAATCGACATGCTGGAATGATGGGAAGCACCACCATAGCCAGGAAATAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000196678-'2-4,'2-3,4-4
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.714 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0092919=RNase_T=PU(11.1=72.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCCCGACTGACTAGCAACA
R:
GCTATGGTGGTGCTTCCCATC
Band lengths:
169-237
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)