BtaEX6108985 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000006448 | ERI2
Description
ERI1 exoribonuclease family member 2 [Source:HGNC Symbol;Acc:HGNC:30541]
Coordinates
chr25:18668627-18672630:-
Coord C1 exon
chr25:18672564-18672630
Coord A exon
chr25:18668787-18668854
Coord C2 exon
chr25:18668627-18668706
Length
68 bp
Sequences
Splice sites
3' ss Seq
GGATTGTTTTACATTTTTAGGCA
3' ss Score
7.42
5' ss Seq
CTAGTAAGT
5' ss Score
8.78
Exon sequences
Seq C1 exon
GCGACTTCCGGCAGTTGGGCTGAGGCTAGAAAGGAACGTCAGGGATGGCGACCAAGAGACTCGCACG
Seq A exon
GCAGCTTGGATTAATTAGGAGAAAATCAATTCCACCAGCAAATGGAAACCTAGGAAGAAGCAAATCTA
Seq C2 exon
AGCAGTTGTTTGACTACTTAATCATCATTGATTTTGAGTCAACATGTTGGAATGATGGGAAACGCCACCGGAGTCAGGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006448-'0-2,'0-1,2-2=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.500 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0092919=RNase_T=PU(10.1=70.4)
Main Skipping Isoform:
ENSBTAT00000008456fB2515
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGACTTCCGGCAGTTGGG
R:
CTGACTCCGGTGGCGTTTC
Band lengths:
143-211
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]