MmuEX6013618 @ mm9
Exon Skipping
Gene
ENSMUSG00000030929 | Eri2
Description
exoribonuclease 2 [Source:MGI Symbol;Acc:MGI:1918401]
Coordinates
chr7:126935779-126937481:-
Coord C1 exon
chr7:126937432-126937481
Coord A exon
chr7:126935945-126936012
Coord C2 exon
chr7:126935779-126935862
Length
68 bp
Sequences
Splice sites
3' ss Seq
CCTGTGTCTTGCATTTTTAGGCG
3' ss Score
10.71
5' ss Seq
TGAGTAAGT
5' ss Score
8.82
Exon sequences
Seq C1 exon
GAACTCTGCGAAACCCAGGGTCCGGGGATGGCGACCAAGAGACTGGCGCG
Seq A exon
GCGGCTTGGATTAATTAGGAGAAAGTCAGTTACACCAGCAAGTGGAAATCCAGGAGGGAGCAGATTGA
Seq C2 exon
AACAGTTGTATGCCTACTTAATTGTCGTTGACTTTGAGTCTACCTGCTGGAATGATGGGAAGCACCACAGTAGCCCTGAAATAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030929-'0-1,'0-0,1-1=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.035 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0092919=RNase_T=PU(7.1=41.7)
C2:
PF0092919=RNase_T=PU(11.1=72.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACTCTGCGAAACCCAGGG
R:
CAGGGCTACTGTGGTGCTTC
Band lengths:
128-196
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: