HsaALTA1053413-2/2 @ hg38
Alternative 3'ss
Gene
ENSG00000196678 | ERI2
Description
ERI1 exoribonuclease family member 2 [Source:HGNC Symbol;Acc:HGNC:30541]
Coordinates
chr16:20803468-20803670:-
Coord C1 exon
chr16:20803603-20803670
Coord A exon
chr16:20803512-20803516
Coord C2 exon
chr16:20803468-20803511
Length
5 bp
Sequences
Splice sites
5' ss Seq
CCAGTGAGT
5' ss Score
8.28
3' ss Seq
AACAACTTGATCTTTTGCAGAGC
3' ss Score
7.8
Exon sequences
Seq C1 exon
GCAGCTTGGATTAATTAGGAGAAAGTCAATTGCGCCAGCAAATGGAAATCTCGGAAGAAGCAAATCCA
Seq A exon
AGCAG
Seq C2 exon
TTGTTTGACTACTTAATTGTCATTGATTTTGAATCGACATGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000196678-12-21,12-20-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0092919=RNase_T=PU(11.1=72.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGAAAGTCAATTGCGCCAGC
R:
AGCATGTCGATTCAAAATCAATGACA
Band lengths:
93-98
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains