BtaALTA0011091-2/3 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000018872 | F12
Description
coagulation factor XII (Hageman factor) [Source:HGNC Symbol;Acc:HGNC:3530]
Coordinates
chr7:40254620-40258689:-
Coord C1 exon
chr7:40258544-40258689
Coord A exon
chr7:40254721-40254725
Coord C2 exon
chr7:40254620-40254720
Length
5 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
ACCCCCACCCTATTCTCCAGCGT
3' ss Score
6.18
Exon sequences
Seq C1 exon
GTGGGGAATATTCCAGCTTCCTGCAGGAGGCTCAGGTGCCACTCATCGACCCGCAGCGCTGCTCCGCCCCCGACGTGCACGGAGCAGCCTTCACCCAGGGCATGCTCTGCGCTGGCTTCCTCGAGGGCGGCACCGACGCATGCCAG
Seq A exon
CGTAG
Seq C2 exon
GCAACCCCTATGTGACGTCACGGTTACCTCAACTTCATAACCACGCCCCTGAATACGTCATAGTGTCCTGGGCATCGTGGGCACATGGCGCAGCTGGACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018872-13-18,13-17,13-16-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=NA
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(20.2=100)
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCACCCAGGGCATGCTCT
R:
AGGGGCGTGGTTATGAAGTTG
Band lengths:
108-113
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development